Three test cases were evaluated to determine the recommended software and hardware configuration capable of keeping pace with the daily output of the latest NGS instrumentation. For each case, the observed wall clock time was recorded for Clara Parabricks analysis pipelines using different resource configurations, data layouts, and sample data.
Data for benchmarking secondary analysis runtime consisted of three human whole genome sequence (WGS) datasets:
These datasets are available at the European Nucleotide Archive (ENA).
